Repo for assignment 7, exploring R packages (FISH 549)
The package is available through the Bioconductor Package. You must use the BiocManager package available via CRAN to download the DESeq2 package. This package acts as a gateway to download all Bioconductor Project R packages. To install using BiocManager, you can use this code:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DESeq2")
Bioconductor offers a very detailed vignette that runs you through using DESeq2 to run a differential expression analysis on RNA-seq data. This documentation is very detailed and hyperlinked to allow you to select which steps you would like to view.
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