Assignment-7

Repo for assignment 7, exploring R packages (FISH 549)

Description and Review of DESeq2 Package

Location

The package is available through the Bioconductor Package. You must use the BiocManager package available via CRAN to download the DESeq2 package. This package acts as a gateway to download all Bioconductor Project R packages. To install using BiocManager, you can use this code:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DESeq2")

Vignettes

Bioconductor offers a very detailed vignette that runs you through using DESeq2 to run a differential expression analysis on RNA-seq data. This documentation is very detailed and hyperlinked to allow you to select which steps you would like to view.

Applications

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